We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

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Smura, Teemu; Sironen, Tarja; Selhorst, Philippe; Anthony, Colin; Ariën, Kevin; Simon-Loriere, Etienne; Rabalski, Lukasz; Bienkowska-Szewczyk, Krystyna; Borges, Vítor; Isidro, Joana; Paulo Gomes, João; Guiomar, Raquel; Pechirra, Pedro; Costa, Inês; Duarte, Sílvia; Vieira, Luís; Pyrc, Krzysztof; S Zuckerman, Neta; Turdikulova, Shahlo; Abdullaev, Alisher; Dalimova, Dilbar; Abdurakhimov, Abror; Tagliabracci, Adriano; Alessandrini, Federica; Melchionda, Filomena; Onofri, Valerio; Turchi, Chiara; Bagnarelli, Patrizia; Menzo, Stefano; Caucci, Sara; DI SANTE, Laura; Popa, Alexandra; Genger, Jakob-Wendelin; Agerer, Benedikt; Lercher, Alexander; Endler, Lukas; Smyth, Mark; Penz, Thomas; Schuster, Michael; Senekowitsch, Martin; Laine, Jan; Bock, Christoph; Bergthaler, Andreas; Shevtsov, Alexandr; Kalendar, Ruslan; Ramanculov, Yerlan; Graf, Alexander; Muenchhoff, Maximilian; T Keppler, Oliver; Krebs, Stefan; Blum, Helmut; Marcello, Alessandro; Licastro, Danilo; D'Agaro, Pierlanfranco; Laubscher, Florian; 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[10.2807/1560-7917.ES.2020.25.32.2001410]

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Adriano Tagliabracci
Membro del Collaboration Group
;
Federica Alessandrini
Membro del Collaboration Group
;
Filomena Melchionda
Membro del Collaboration Group
;
Valerio Onofri
Membro del Collaboration Group
;
Chiara Turchi
Membro del Collaboration Group
;
Patrizia Bagnarelli
Membro del Collaboration Group
;
Stefano Menzo
Membro del Collaboration Group
;
Sara Caucci
Membro del Collaboration Group
;
Laura Di Sante
Membro del Collaboration Group
;
2020-01-01

Abstract

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
2020
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11566/283651
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