We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 / E., Alm; E. K., Broberg; T., Connor; E. B., Hodcroft; A. B., Komissarov; S., Maurer-Stroh; A., Melidou; R. 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Salerno, Franco; Polesello, Stefano; Nagy, Alexander; Jirincova, Helena; Vecerova, Jaromira; Novakova, Ludmila; Cordey, Samuel; Murtskhvaladze, Marine; Kotaria, Nato; Schär, Tobias; Beisel, Christian; Vugrek, Oliver; Rokić, Filip; Trgovec-Greif, Lovro; Jurak, Igor; Rukavina, Tomislav; Sučić, Neven; Schønning, Kristian; M Karst, Søren; H Kirkegaard, Rasmus; Y Michaelsen, Thomas; Aa Sørensen, Emil; Knutson, Simon; Brandt, Jakob; Le-Quy, Vang; Sørensen, Trine; Petersen, Celine; Schou Pedersen, Martin; Løkkegaard Larsen, Sanne; Nielsine Skov, Marianne; Rasmussen, Morten; Fonager, Jannik; Fomsgaard, Anders; Amirovich Maksyutov, Rinat; Vasil'Evna Gavrilova, Elena; Victorovich Pyankov, Oleg; Alexandrovich Bodnev, Sergey; Vladimirovna Tregubchak, Tatyana; Nikolayevich Shvalov, Alexander; Victorovich Antonets, Denis; Cristina Resende, Paola; Goya, Stephanie; Perrin, Amandine; Tc Lee, Raphael; Yadahalli, Shilpa; X Han, Alvin; A Russell, Colin; Schmutz, Stefan; Zaheri, Maryam; Kufner, Verena; Huber, Michael; 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Smura, Teemu; Sironen, Tarja; Selhorst, Philippe; Anthony, Colin; Ariën, Kevin; Simon-Loriere, Etienne; Rabalski, Lukasz; Bienkowska-Szewczyk, Krystyna; Borges, Vítor; Isidro, Joana; Paulo Gomes, João; Guiomar, Raquel; Pechirra, Pedro; Costa, Inês; Duarte, Sílvia; Vieira, Luís; Pyrc, Krzysztof; S Zuckerman, Neta; Turdikulova, Shahlo; Abdullaev, Alisher; Dalimova, Dilbar; Abdurakhimov, Abror; Tagliabracci, Adriano; Alessandrini, Federica; Melchionda, Filomena; Onofri, Valerio; Turchi, Chiara; Bagnarelli, Patrizia; Menzo, Stefano; Caucci, Sara; DI SANTE, Laura; Popa, Alexandra; Genger, Jakob-Wendelin; Agerer, Benedikt; Lercher, Alexander; Endler, Lukas; Smyth, Mark; Penz, Thomas; Schuster, Michael; Senekowitsch, Martin; Laine, Jan; Bock, Christoph; Bergthaler, Andreas; Shevtsov, Alexandr; Kalendar, Ruslan; Ramanculov, Yerlan; Graf, Alexander; Muenchhoff, Maximilian; T Keppler, Oliver; Krebs, Stefan; Blum, Helmut; Marcello, Alessandro; Licastro, Danilo; D'Agaro, Pierlanfranco; Laubscher, Florian; Vidanovic, Dejan; Tesovic, Bojana; Volkening, Jeremy; Clementi, Nicola; Mancini, Nicasio; Rupnik, Maja; Mahnic, Aleksander; Walker, Andreas; Houwaart, Torsten; Wienemann, Tobias; Kohns Vasconcelos, Malte; Strelow, Daniel; Ole Jensen, Björn-Erik; Senff, Tina; Hülse, Lisanna; Adams, Ortwin; Andree, Marcel; Hauka, Sandra; Feldt, Torsten; Keitel, Verena; Kindgen-Milles, Detlef; Timm, Jörg; Pfeffer, Klaus; T Dilthey, Alexander; Moore, Catherine; Ozdarendeli, Aykut; Terkis Islam Pavel, Shaikh; Yetiskin, Hazel; Aydin, Gunsu; Holyavkin, Can; Ali Uygut, Muhammet; Cevik, Ceren; Shchetinin, Alexey; Gushchin, Vladimir; Dinler-Doganay, Gizem; Doganay, Levent; Kizilboga-Akgun, Tugba; Karacan, Ilker; Pancer, Katarzyna; Maes, Piet; Martí-Carreras, Joan; Wawina-Bokalanga, Tony; Vanmechelen, Bert; Thürmer, Andrea; Wedde, Marianne; Dürrwald, Ralf; Von Kleist, Max; Drechsel, Oliver; Wolff, Thorsten; Fuchs, Stephan; Kmiecinski, Rene; Michel, Janine; Nitsche, Andreas; Casas, Inmaculada; Iglesias Caballero, María; Zaballos, Ángel; Jiménez, Pilar; Jiménez, Mercedes; Monzón Fernández, Sara; Varona Fernández, Sarai; Cuesta De La Plaza, Isabel; Fadeev, Artem; Ivanova, Anna; Sergeeva, Mariia; Stefanelli, Paola; Estee Torok, M; Hall, Grant; da Silva Filipe, Ana; Turtle, Lance; Afifi, Safiah; Mccluggage, Kathryn; Beer, Robert; Ledesma, Juan; Maksimovic, Joshua; Spellman, Karla; L Hamilton, William; Marchbank, Angela; Alexander Southgate, Joel; Underwood, Anthony; Taylor, Ben; Yeats, Corin; Abudahab, Khalil; R Gemmell, Matthew; Eccles, Richard; Lucaci, Anita; Abigail Nelson, Charlotte; Rainbow, Lucille; Whitehead, Mark; Gregory, Richard; Haldenby, Sam; Paterson, Steve; A Hughes, Margaret; D Curran, Martin; Baker, David; Tucker, Rachel; R Green, Luke; Feltwell, Theresa; D Halstead, Fenella; Wyles, Matthew; S Jahun, Aminu; Y Ahmad, Shazaad S; Georgana, Iliana; Goodfellow, Ian; Yakovleva, Anna; W Meredith, Luke; Gavriil, Artemis; Raza Awan, Ali; Fisher, Chloe; Edgeworth, Jonathan; Lynch, Jessica; Moore, Nathan; Williams, Rebecca; P Kidd, Stephen; Cortes, Nicholas; Brunker, Kirstyn; T Mccrone, John; Quick, Joshua; Duckworth, Nichola; Walsh, Sarah; Sloan, Tim; Ludden, Catherine; P George, Ryan; Eltringham, Gary; R Brown, Julianne; Aranday-Cortes, Elihu; G Shepherd, James; Hughes, Joseph; K Li, Kathy; C Williams, Thomas; Johnson, Natasha; Jesudason, Natasha; Mair, Daniel; Thomson, Emma; Shah, Rajiv; A Parr, Yasmin; Carmichael, Stephen; L Robertson, David; Nomikou, Kyriaki; Broos, Alice; Niebel, Marc; Smollett, Katherine; Tong, Lily; Miah, Shahjahan; Wittner, Anita; Phillips, Nicole; Payne, Brendan; Dewar, Rebecca; Holmes, Alison; Bolt, Frances; R Price, James; Mookerjee, Siddharth; K Sethi, Dheeraj; Potter, Will; Stanley, Rachael; Prakash, Reenesh; Dervisevic, Samir; Clive Graham, Jonathan; Nelson, Andrew; Smith, Darren; R Young, Gregory; Chyin Yew, Wen; A Todd, John; Trebes, Amy; Andersson, Monique; Bull, Matthew; Watkins, Joanne; Birchley, Alec; Gatica-Wilcox, Bree; Gilbert, Lauren; Kumžiene-Summerhayes, Sara; Rey, Sara; Chauhan, Anoop; Butcher, Ethan; Bicknell, Kelly; Elliott, Scott; Glaysher, Sharon; Lackenby, Angie; Bibby, David; Platt, Steven; Mohamed, Hodan; William Machin, Nicholas; Lutamyo Mbisa, Jean; Evans, Jonathan; Perry, Malorie; Pacchiarini, Nicole; Corden, Sally; Geraint Adams, Alexander; Gaskin, Amy; Coombs, Jason; John Graham, Lee; Cottrell, Simon; Morgan, Mari; Gifford, Laura; Kolyva, Anastasia; John Rudder, Steven; J Trotter, Alexander; E Mather, Alison; Aydin, Alp; J Page, Andrew; L Kay, Gemma; de Oliveira Martins, Leonardo; Yasir, Muhammad; Alikhan, Nabil-Fareed; M Thomson, Nicholas; Gilroy, Rachel; A Kingsley, Robert; O'Grady, Justin; Victoria Gutierrez, Ana; Diaz, Maria; Le Viet, Thanh; P Tedim, Ana; M Adriaenssens, Evelien; Patrick Mcclure, C; Moore, Christopher; Sang, Fei; Clark, Gemma; C Howson-Wells, Hannah; Debebe, Johnny; Ball, Jonathan; Chappell, Joseph; Khakh, Manjinder; Carlile, Matthew; Loose, Matthew; M Lister, Michelle; Holmes, Nadine; Tsoleridis, Theocharis; 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Pybus, Oliver; Golubchik, Tanya; Scarlett, Garry; F Loveson, Katie; C Robson, Samuel; Beckett, Angela; Lindsey, Benjamin; C Groves, Danielle; J Parsons, Paul; P Mchugh, Martin; Daniel Barnes, James; F Manso, Carmen; Grammatopoulos, Dimitris; Elisabeth Menger, Katja; Harrison, Ewan; Gunson, Rory; J Peacock, Sharon; Gonzalez, Gabriel; Carr, Michael; Mihaela, Lazar; Popovici, Odette; Brytting, Mia; Bresner, Catherine; Fuller, William; Workman, Trudy; F Mentis, Andreas; Kossyvakis, Athanasios; Karamitros, Timokratis; Pogka, Vasiliki; Kalliaropoulos, Antonios; Horefti, Elina; Kontou, Aspasia; Martinez-Gonzalez, Beatriz; Labropoulou, Voula; Voulgari-Kokota, Androniki; Evangelidou, Maria; Bizta, Panagiota; Belimezi, Maria; Lambrechts, Laurens; Z Doymaz, Mehmet; Kalkan Yazici, Merve; S Cetin, Nesibe; Karaaslan, Elif; Kallio-Kokko, Hannimari; Virtanen, Jenni; Suvanto, Maija; Truong Nguyen, Phuoc; Ellonen, Pekka; Hannula, Sari; Kangas, Harri; B Sreenu, Vattipally; Burián, Katalin; Terhes, Gabriella; Gombos, Katalin; Gyenesei, Attila; Urbán, Péter; Herczeg, Róbert; Jakab, Ferenc; Kemenesi, Gábor; Endre Tóth, Gábor; Somogyi, Balázs; Zana, Brigitta; Zeghbib, Safia; Kuczmog, Anett; Földes, Fanni; Lanszki, Zsófia; Madai, Mónika; Papp, Henrietta; Nagy, Ágnes; István Pereszlényi, Csaba; Csaba Babinszky, Gergely; Dudás, Gábor; Csoma, Eszter; N Abou Tayoun, Ahmad; A Alsheikh-Ali, Alawi; Loney, Tom; Nowotny, Norbert; Abdul-Wahab, Osama; Gonzalez-Candelas, Fernando; H Andersen, Martin; Sarah Taylor, And. - In: EUROSURVEILLANCE. - ISSN 1560-7917. - 25:32(2020). [10.2807/1560-7917.ES.2020.25.32.2001410]
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Adriano TagliabracciMembro del Collaboration Group
;Federica AlessandriniMembro del Collaboration Group
;Filomena MelchiondaMembro del Collaboration Group
;Valerio OnofriMembro del Collaboration Group
;Chiara TurchiMembro del Collaboration Group
;Patrizia BagnarelliMembro del Collaboration Group
;Stefano MenzoMembro del Collaboration Group
;Sara CaucciMembro del Collaboration Group
;Laura Di SanteMembro del Collaboration Group
;
2020-01-01
Abstract
We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.File | Dimensione | Formato | |
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