We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

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Salerno, Franco; Polesello, Stefano; Nagy, Alexander; Jirincova, Helena; Vecerova, Jaromira; Novakova, Ludmila; Cordey, Samuel; Murtskhvaladze, Marine; Kotaria, Nato; Schär, Tobias; Beisel, Christian; Vugrek, Oliver; Rokić, Filip; Trgovec-Greif, Lovro; Jurak, Igor; Rukavina, Tomislav; Sučić, Neven; Schønning, Kristian; M Karst, Søren; H Kirkegaard, Rasmus; Y Michaelsen, Thomas; Aa Sørensen, Emil; Knutson, Simon; Brandt, Jakob; Le-Quy, Vang; Sørensen, Trine; Petersen, Celine; Schou Pedersen, Martin; Løkkegaard Larsen, Sanne; Nielsine Skov, Marianne; Rasmussen, Morten; Fonager, Jannik; Fomsgaard, Anders; Amirovich Maksyutov, Rinat; Vasil'Evna Gavrilova, Elena; Victorovich Pyankov, Oleg; Alexandrovich Bodnev, Sergey; Vladimirovna Tregubchak, Tatyana; Nikolayevich Shvalov, Alexander; Victorovich Antonets, Denis; Cristina Resende, Paola; Goya, Stephanie; Perrin, Amandine; Tc Lee, Raphael; Yadahalli, Shilpa; X Han, Alvin; A Russell, Colin; Schmutz, Stefan; Zaheri, Maryam; Kufner, Verena; Huber, Michael; 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Smura, Teemu; Sironen, Tarja; Selhorst, Philippe; Anthony, Colin; Ariën, Kevin; Simon-Loriere, Etienne; Rabalski, Lukasz; Bienkowska-Szewczyk, Krystyna; Borges, Vítor; Isidro, Joana; Paulo Gomes, João; Guiomar, Raquel; Pechirra, Pedro; Costa, Inês; Duarte, Sílvia; Vieira, Luís; Pyrc, Krzysztof; S Zuckerman, Neta; Turdikulova, Shahlo; Abdullaev, Alisher; Dalimova, Dilbar; Abdurakhimov, Abror; Tagliabracci, Adriano; Alessandrini, Federica; Melchionda, Filomena; Onofri, Valerio; Turchi, Chiara; Bagnarelli, Patrizia; Menzo, Stefano; Caucci, Sara; DI SANTE, Laura; Popa, Alexandra; Genger, Jakob-Wendelin; Agerer, Benedikt; Lercher, Alexander; Endler, Lukas; Smyth, Mark; Penz, Thomas; Schuster, Michael; Senekowitsch, Martin; Laine, Jan; Bock, Christoph; Bergthaler, Andreas; Shevtsov, Alexandr; Kalendar, Ruslan; Ramanculov, Yerlan; Graf, Alexander; Muenchhoff, Maximilian; T Keppler, Oliver; Krebs, Stefan; Blum, Helmut; Marcello, Alessandro; Licastro, Danilo; D'Agaro, Pierlanfranco; Laubscher, Florian; Vidanovic, Dejan; Tesovic, Bojana; Volkening, Jeremy; Clementi, Nicola; Mancini, Nicasio; Rupnik, Maja; Mahnic, Aleksander; Walker, Andreas; Houwaart, Torsten; Wienemann, Tobias; Kohns Vasconcelos, Malte; Strelow, Daniel; Ole Jensen, Björn-Erik; Senff, Tina; Hülse, Lisanna; Adams, Ortwin; Andree, Marcel; Hauka, Sandra; Feldt, Torsten; Keitel, Verena; Kindgen-Milles, Detlef; Timm, Jörg; Pfeffer, Klaus; T Dilthey, Alexander; Moore, Catherine; Ozdarendeli, Aykut; Terkis Islam Pavel, Shaikh; Yetiskin, Hazel; Aydin, Gunsu; Holyavkin, Can; Ali Uygut, Muhammet; Cevik, Ceren; Shchetinin, Alexey; Gushchin, Vladimir; Dinler-Doganay, Gizem; Doganay, Levent; Kizilboga-Akgun, Tugba; Karacan, Ilker; Pancer, Katarzyna; Maes, Piet; Martí-Carreras, Joan; Wawina-Bokalanga, Tony; Vanmechelen, Bert; Thürmer, Andrea; Wedde, Marianne; Dürrwald, Ralf; Von Kleist, Max; Drechsel, Oliver; Wolff, Thorsten; Fuchs, Stephan; Kmiecinski, Rene; Michel, Janine; Nitsche, Andreas; Casas, Inmaculada; Iglesias Caballero, María; Zaballos, Ángel; Jiménez, Pilar; Jiménez, Mercedes; Monzón Fernández, Sara; Varona Fernández, Sarai; Cuesta De La Plaza, Isabel; Fadeev, Artem; Ivanova, Anna; Sergeeva, Mariia; Stefanelli, Paola; Estee Torok, M; Hall, Grant; da Silva Filipe, Ana; Turtle, Lance; Afifi, Safiah; Mccluggage, Kathryn; Beer, Robert; Ledesma, Juan; Maksimovic, Joshua; Spellman, Karla; L Hamilton, William; Marchbank, Angela; Alexander Southgate, Joel; Underwood, Anthony; Taylor, Ben; Yeats, Corin; Abudahab, Khalil; R Gemmell, Matthew; Eccles, Richard; Lucaci, Anita; Abigail Nelson, Charlotte; Rainbow, Lucille; Whitehead, Mark; Gregory, Richard; Haldenby, Sam; Paterson, Steve; A Hughes, Margaret; D Curran, Martin; Baker, David; Tucker, Rachel; R Green, Luke; Feltwell, Theresa; D Halstead, Fenella; Wyles, Matthew; S Jahun, Aminu; Y Ahmad, Shazaad S; Georgana, Iliana; Goodfellow, Ian; Yakovleva, Anna; W Meredith, Luke; Gavriil, Artemis; Raza Awan, Ali; Fisher, Chloe; Edgeworth, Jonathan; Lynch, Jessica; Moore, Nathan; Williams, Rebecca; P Kidd, Stephen; Cortes, Nicholas; Brunker, Kirstyn; T Mccrone, John; Quick, Joshua; Duckworth, Nichola; Walsh, Sarah; Sloan, Tim; Ludden, Catherine; P George, Ryan; Eltringham, Gary; R Brown, Julianne; Aranday-Cortes, Elihu; G Shepherd, James; Hughes, Joseph; K Li, Kathy; C Williams, Thomas; Johnson, Natasha; Jesudason, Natasha; Mair, Daniel; Thomson, Emma; Shah, Rajiv; A Parr, Yasmin; Carmichael, Stephen; L Robertson, David; Nomikou, Kyriaki; Broos, Alice; Niebel, Marc; Smollett, Katherine; Tong, Lily; Miah, Shahjahan; Wittner, Anita; Phillips, Nicole; Payne, Brendan; Dewar, Rebecca; Holmes, Alison; Bolt, Frances; R Price, James; Mookerjee, Siddharth; K Sethi, Dheeraj; Potter, Will; Stanley, Rachael; Prakash, Reenesh; Dervisevic, Samir; Clive Graham, Jonathan; Nelson, Andrew; Smith, Darren; R Young, Gregory; Chyin Yew, Wen; A Todd, John; Trebes, Amy; Andersson, Monique; Bull, Matthew; Watkins, Joanne; Birchley, Alec; Gatica-Wilcox, Bree; Gilbert, Lauren; Kumžiene-Summerhayes, Sara; 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Gombos, Katalin; Gyenesei, Attila; Urbán, Péter; Herczeg, Róbert; Jakab, Ferenc; Kemenesi, Gábor; Endre Tóth, Gábor; Somogyi, Balázs; Zana, Brigitta; Zeghbib, Safia; Kuczmog, Anett; Földes, Fanni; Lanszki, Zsófia; Madai, Mónika; Papp, Henrietta; Nagy, Ágnes; István Pereszlényi, Csaba; Csaba Babinszky, Gergely; Dudás, Gábor; Csoma, Eszter; N Abou Tayoun, Ahmad; A Alsheikh-Ali, Alawi; Loney, Tom; Nowotny, Norbert; Abdul-Wahab, Osama; Gonzalez-Candelas, Fernando; H Andersen, Martin; Sarah Taylor, And. - In: EUROSURVEILLANCE. - ISSN 1560-7917. - 25:32(2020). [10.2807/1560-7917.ES.2020.25.32.2001410]

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Adriano Tagliabracci;Federica Alessandrini;Filomena Melchionda;Valerio Onofri;Chiara Turchi;Patrizia Bagnarelli;Stefano Menzo;Sara Caucci;Laura Di Sante;
2020-01-01

Abstract

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
2020
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11566/283651
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